No. | Organism Name | Abbreviation |
| 0. | Archaeoglobus_fulgidus | afulgidus |
| 1. | Aeropyrum_pernix | apernix |
| 2. | Halobacterium_sp._NRC-1_(whole_genome) | halobacterium_spNRC1 |
| 3. | Methanosarcina_acetivorans_str._C2A | macetivorans_C2A |
| 4. | Methanococcus_jannaschii_(whole_genome) | mjannaschii |
| 5. | Methanopyrus_kandleri_AV19 | mkandleri_AV19 |
| 6. | Methanosarcina_mazei_Goe1 | mmazei_Goe1 |
| 7. | Methanothermobacter_thermautotrophicus_str._Delta_H | mthermoautotrophicum_DeltaH |
| 8. | Pyrococcus_abyssi | pabyssi |
| 9. | Pyrobaculum_aerophilum | paerophilum |
| 10. | Pyrococcus_furiosus_DSM_3638 | pfuriosus_DSM3638 |
| 11. | Pyrococcus_horikoshii | phorikoshii |
| 12. | Sulfolobus_solfataricus | ssolfataricus |
| 13. | Sulfolobus_tokodaii | stokodaii |
| 14. | Thermoplasma_acidophilum | tacidophilum |
| 15. | Thermoplasma_volcanium | tvolcanium |
| 16. | Aquifex_aeolicus_(whole_genome) | aaeolicus |
| 17. | Agrobacterium_tumefaciens_str._C58_(Cereon)_(whole_genome) | atumefaciens_C58cereon |
| 18. | Agrobacterium_tumefaciens_str._C58_(UWash)_(whole_genome) | atumefaciens_C58uwash |
| 19. | Borrelia_burgdorferi_(whole_genome) | bburgdorferi |
| 20. | Bacillus_halodurans | bhalodurans |
| 21. | Brucella_melitensis_(whole_genome) | bmelitensis |
| 22. | Bacillus_subtilis | bsubtilis |
| 23. | Buchnera_sp._APS_(whole_genome) | buchnera_spAPS |
| 24. | Clostridium_acetobutylicum_ATCC824_(whole_genome) | cacetobutylicum_ATCC824 |
| 25. | Caulobacter_crescentus_CB15 | ccrescentus_CB15 |
| 26. | Corynebacterium_glutamicum | cglutamicum |
| 27. | Campylobacter_jejuni | cjejuni |
| 28. | Chlamydia_muridarum_(whole_genome) | cmuridarum |
| 29. | Clostridium_perfringens_(whole_genome) | cperfringens |
| 30. | Chlamydophila_pneumoniae_AR39 | cpneumoniae_AR39 |
| 31. | Chlamydophila_pneumoniae_CWL029 | cpneumoniae_CWL029 |
| 32. | Chlamydophila_pneumoniae_J138 | cpneumoniae_J138 |
| 33. | Chlamydia_trachomatis | ctrachomatis |
| 34. | Deinococcus_radiodurans_R1_(whole_genome) | dradiodurans_R1 |
| 35. | Escherichia_coli_K12 | ecoli_K12 |
| 36. | Escherichia_coli_O157:H7 | ecoli_O157H7 |
| 37. | Escherichia_coli_O157:H7_EDL933 | ecoli_O157H7_EDL933 |
| 38. | Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 | fnucleatum_nucleatum_ATCC25586 |
| 39. | Haemophilus_influenzae_Rd_KW20 | hinfluenzae_KW20 |
| 40. | Helicobacter_pylori_26695 | hpylori_26695 |
| 41. | Helicobacter_pylori_J99 | hpylori_J99 |
| 42. | Listeria_innocua_(whole_genome) | linnocua |
| 43. | Lactococcus_lactis_subsp._lactis | llactis_lactis |
| 44. | Listeria_monocytogenes_EGD-e | lmonocytogenes_EGDe |
| 45. | Mycoplasma_genitalium | mgenitalium |
| 46. | Mycobacterium_leprae | mleprae |
| 47. | Mesorhizobium_loti_(whole_genome) | mloti |
| 48. | Mycoplasma_pneumoniae | mpneumoniae |
| 49. | Mycoplasma_pulmonis | mpulmonis |
| 50. | Mycobacterium_tuberculosis_CDC1551 | mtuberculosis_CDC1551 |
| 51. | Mycobacterium_tuberculosis_H37Rv | mtuberculosis_H37Rv |
| 52. | Neisseria_meningitidis_MC58 | nmeningitidis_MC58 |
| 53. | Neisseria_meningitidis_Z2491 | nmeningitidis_Z2491 |
| 54. | Nostoc_sp._PCC_7120_(whole_genome) | nostoc_spPCC7120 |
| 55. | Pseudomonas_aeruginosa | paeruginosa |
| 56. | Pasteurella_multocida | pmultocida |
| 57. | Rickettsia_conorii | rconorii |
| 58. | Rickettsia_prowazekii | rprowazekii |
| 59. | Ralstonia_solanacearum_(whole_genome) | rsolanacearum |
| 60. | Staphylococcus_aureus_subsp._aureus_MW2 | saureus_MW2 |
| 61. | Staphylococcus_aureus_subsp._aureus_Mu50_pVRSAp | saureus_Mu50-plsVRSAp |
| 62. | Staphylococcus_aureus_subsp._aureus_N315_(whole_genome) | saureus_N315 |
| 63. | Streptomyces_coelicolor_A3(2)_(whole_genome) | scoelicolor_A3_2 |
| 64. | Sinorhizobium_meliloti_(whole_genome) | smeliloti |
| 65. | Streptococcus_pneumoniae_R6 | spneumoniae_R6 |
| 66. | Streptococcus_pneumoniae_TIGR4 | spneumoniae_TIGR4 |
| 67. | Streptococcus_pyogenes_M1_GAS | spyogenes_M1GAS |
| 68. | Streptococcus_pyogenes_MGAS8232 | spyogenes_MGAS8232 |
| 69. | Salmonella_typhi_(whole_genome) | styphi |
| 70. | Salmonella_typhimurium_LT2_(whole_genome) | styphimurium_LT2 |
| 71. | Synechocystis_sp._PCC_6803 | synechocystis_spPCC6803 |
| 72. | Thermotoga_maritima | tmaritima |
| 73. | Treponema_pallidum | ttallidum |
| 74. | Thermoanerobacter_tengcogensis | ttengcongensis |
| 75. | Ureaplasma_urealyticum | uurealyticum |
| 76. | Vibrio_cholerae_(whole_genome) | vcholerae |
| 77. | Xanthomonas_axonopodis_pv._citri_str._306 | xaxonopodis_citri |
| 78. | Xanthomonas_campestris_pv._campestris_str._ATCC_33913 | xcampestris_campestris_ATCC33913 |
| 79. | Xylella_fastidiosa_9a5c_(whole_genome) | xfastidiosa_9a5c |
| 80. | Yersinia_pestis_(whole_genome) | ypestis_CO92 |
| 81. | Arabidopsis_thaliana_(whole_genome) | athaliana |
| 82. | Caenorhabditis_elegans_(whole_genome) | celegans |
| 83. | Drosophila_melanogaster_(whole_genome) | dmelanogaster |
| 84. | Encephalitozoon_cuniculi_(whole_genome) | ecuniculi |
| 85. | Homo_sapiens_(whole_genome) | hsapiens |
| 86. | Neurospora_crassa | ncrassa |
| 87. | Saccharomyces_cerevisiae_(whole_genome) | scerevisiae |
| 88. | Schizosaccharomyces_pombe_(whole_genome) | spombe |